PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31023.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 1131aa    MW: 125125 Da    PI: 8.5589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31023.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-0794115426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              + C++f++ G+Ck Gd+C FaHg
  mrna31023.1-v1.0-hybrid  94 SACPDFRK-GHCKKGDSCEFAHG 115
                              67******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.3E-590116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.82691117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-594117IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-594115IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.615125149IPR000571Zinc finger, CCCH-type
SMARTSM0035613125148IPR000571Zinc finger, CCCH-type
SuperFamilySSF1034739.68E-25559785IPR020846Major facilitator superfamily domain
PROSITE patternPS010220625649IPR018456PTR2 family proton/oligopeptide symporter, conserved site
PfamPF008546.1E-1016361075IPR000109Proton-dependent oligopeptide transporter family
SuperFamilySSF1034739.68E-258661116IPR020846Major facilitator superfamily domain
CDDcd061747.93E-48821100IPR020846Major facilitator superfamily domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006857Biological Processoligopeptide transport
GO:0009611Biological Processresponse to wounding
GO:0009753Biological Processresponse to jasmonic acid
GO:0016020Cellular Componentmembrane
GO:0005215Molecular Functiontransporter activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1131 aa     Download sequence    Send to blast
MASDSPTSPN SPYLPSEEAL SAALRRYLPS NNEGSDPDPD SPVDAYSGDH FRMFEFKVRR  60
CARGRSHDWT DCPFAHPGEE AQRRDPRKFH YSGSACPDFR KGHCKKGDSC EFAHGVFECW  120
LHPARYRTQP CKDGTSCKRR VCFFAHTPEQ LRVLPQQSPR GSNSPPMTRS VSRSLGLSSV  180
SEMVASLRKV KSLPTSWNVQ VGLVGSVGSP GFVSPRGSML QPGFCSLPST PTRIPTCSTA  240
GVLDFCDEGG TPVIQTGNVE GSRIRRMLAG IRLASPISMG DTLVIQTGDV ETGHLLTGSR  300
FGVGRSDITP MNDDFRMYIA NAEPQTGNYP LPLEISGDNS HLVRPLEQHL RSNCFVKLFV  360
TSEILGMVFE IIYQESHIMA YFFIWFVCAM IAMYVARLLA MIEGGMANRE QFAVYLRCFS  420
FLLLELLQYW GIHQGNYITA LKIILRVTGA IIGWWVVGVL QSYMDAFVNG KPPREFCAAV  480
ADLLEAQRAQ LLCSPSPSSA IPYVPSRDQS DGNDDKEKSQ IAYFFKRFFL LVNIVTLMAV  540
TEEKMSWTAA DAVDYKGFPA DKSRTGGWVS AALILGIEIC ERLSTMGIAV NLVTYLVGTM  600
HLPSSTSANI VTDFAGTSFL LCLLGGFLAD SFLGRYKTIA IFASIQSLGI VALAISVKLP  660
QLRPPHCDIT AANNDCQQAN EFQMGFLYLA LYMIALGIGG LKSSVSGFGT DQFDDKDDKE  720
KAQMAYFFNR FFFFISTGTL MAVTVLVYIQ DQVDRSLAYG ICSISMFIAI LVFFSGTKRY  780
RYKKSTGSPI VQIFQVIVAA VRKRKMPLPF DVALLYENYP EASRICHTDQ FRVDTHPVQF  840
SVSFLDKAAI VAEEDFERNA PAGSLPNPWK LCSVTRVEEV KMMVKLLPIW ATTIMFWTAY  900
AQMLTFSVEQ ASTMERSIGK FQIPAGSLTV FFVLAILITL AVNDRIIMPV WKKWKGQPGF  960
TNLQRIAIGL VLSTLGMAAA ALTEKKRLLV AKGMKTMSTG ALPISVYWLI PQFFLVGSGE  1020
AFIYTGQLDF FITQSPKGMK TMSTGLFLST IALGFFVSSF LVSIVRRFTG SKDGQGWLAD  1080
NINYGRLDCF YGLLSVLSVI NFVAYLVCAR WYKPRKPTKP SNGSSAEDKC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4oh3_A0.053811291583Nitrate transporter 1.1
4oh3_B0.053811291583Nitrate transporter 1.1
5a2n_A0.053811291583PROTEIN NRT1/ PTR FAMILY 6.3
5a2n_B0.053811291583PROTEIN NRT1/ PTR FAMILY 6.3
5a2o_A0.053811291583NITRATE TRANSPORTER 1.1
5a2o_B0.053811291583NITRATE TRANSPORTER 1.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458172.10.0PREDICTED: protein NRT1/ PTR FAMILY 6.2
SwissprotQ9SZY40.0PTR27_ARATH; Protein NRT1/ PTR FAMILY 6.2
TrEMBLM5W9T30.0M5W9T3_PRUPE; Uncharacterized protein
STRINGGLYMA17G12420.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-86C3H family protein